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Journals 2009                                                                                                  

Bioinformatics and Systems Biology

add the bullet in front of each paper Tianming Liu, Hanchuan Peng, Xiaobo Zhou
Imaging informatics for personalised medicine: applications and challenges.
I. J. Functional Informatics and Personalised Medicine 2(2): 125-135 (2009) [ PMID: 19862353 ]

add the bullet in front of each paper Bo Geng, Xiaobo Zhou, Y. S. Hung
Growing enzyme gene networks by integration of gene expression, motif sequence, and metabolic information. Pattern Recognition 42(4): 557-561 (2009)

add the bullet in front of each paper Zhang S, Degraba TJ, Wang H, Hoehn GT, Gonzales DA, Suffredini AF, Ching WK, Ng MK, Zhou X, Wong ST.
A novel peak detection approach with chemical noise removal using short-time FFT for prOTOF MS data.
Proteomics. 2009 Aug 13;9(15):3833-3842. [Epub ahead of print]. [ PMID: 19681055 ]

add the bullet in front of each paper Chang CC, Zhou X, Taylor JJ, Huang WT, Ren X, Monzon F, Feng Y, Rao PH, Lu XY, Fabio F, Hilsenbeck S, Creighton CJ, Jaffe ES, Lau CC.
Genomic profiling of plasmablastic lymphoma using array comparative genomic hybridization (aCGH): revealing significant overlapping genomic lesions with diffuse large B-cell lymphoma.
J Hematol Oncol. 2009 Nov 12;2:47. [ PMID: 19909553 ]

add the bullet in front of each paper Jin G, Zhou X, Cui K, Zhang XS, Chen L, Wong ST. Wong.
A cross-platform method for identifying candidate network biomarkers for prostate cancer.
IET Systems Biology, 2009 Nov;3(6):505. [ PMID: 19947776 ]

add the bullet in front of each paper G Jin, K.Cui, X. Zhou, Wong ST.
Unraveling the signal-transduction networks in cancer metastasis.
IEEE Signal Processing Magazine, Volume 26, Issue 5, September 2009 Page(s):129 - 132

add the bullet in front of each paper Peng Zhang, Houqiang Li, Honghui Wang, Wong Stephen, Xiaobo Zhou.
Peak Tree: A New Tool for Multiscale Hierarchical Representation and Peak Detection of Mass Spectrometry Data.
IEEE/ACM Transactions on Computational Biology and Bioinformatics, 02 Jun. 2009. IEEE computer Society Digital Library. IEEE Computer Society.

add the bullet in front of each paper Fan J, Zhou X, Dy JG, Zhang Y, Wong ST.
An Automated Pipeline for Dendrite Spine Detection and Tracking of 3D Optical Microscopy Neuron Images of In Vivo Mouse Models.
Neuroinformatics. 2009 Jun;7(2):113-30. [ PMID: 19434521 ]

add the bullet in front of each paper Zhou X, Wang H, Wang J, Wang Y, Hoehn G, Azok J, Brennan ML, Hazen SL, Li K, Chang SF, Wong ST.
Identification of biomarkers for risk stratification of cardiovascular events using genetic algorithm with recursive local floating search.
Proteomics. 2009 Apr;9(8):2286-94 [ PMID: 19337989 ]

add the bullet in front of each paper Donggang Yu, Tuan D. Pham, Xiaobo Zhou, Stephen T. C. Wong
Recognition and analysis of cell nuclear phases for high-content screening based on morphological features.
Pattern Recognition 42(4): 498-508 (2009)

add the bullet in front of each paper Zheng Yin, Xiaobo Zhou, Youxian Sun, Stephen T. C. Wong.
Online phenotype discovery based on minimum classification error model.
Pattern Recognition 42(4): 509-522 (2009)

add the bullet in front of each paper Zhou X, Li F, Yan J, Wong ST.
A novel cell segmentation method and cell phase identification using Markov model.
IEEE Trans Inf Technol Biomed. 2009 Mar;13(2):152-7. [ PMID: 19272857 ]

add the bullet in front of each paper Wang J, Zhou X, Li F, Bradley PL, Chang SF, Perrimon N, Wong ST
An image score inference system for RNAi genome-wide screening based on fuzzy mixture regression modeling
J Biomed Inform. 2009 Feb;42(1):32-40. [ PMID: 18547870 ]

add the bullet in front of each paper Firdaus Janoos,Kishore Mosaliganti, Xiaoyin Xu,Raghu Machiraju, Kun Huang,Stephen T.C. Wong
Robust 3D Reconstruction and Identification of Dendritic Spines from Optical Microscopy Imaging
Med Image Anal. 2009 Feb;13(1):167-79. [ PMID: 18819835 ]

add the bullet in front of each paper Kamali M, Day LJ, Brooks DH, Zhou XB, and OĦŻMalley DM
Automated Identification of Neurons in 3D Confocal Datasets from Zebrafish Brainstem.
Journal of Microscopy, 2009 Jan;233(1):114-31. [ PMID: 19196418 ]

add the bullet in front of each paper Wu LY, Zhou X, Li F, Yang X, Chang CC, Wong ST.
Conditional Random Pattern Algorithm for LOH Inference and Segmentation.
Bioinformatics Vol. 25, No. 1, 61-67, 2009 [ PMID: 18974074 ]

add the bullet in front of each paper Srinivasan R, Zhou X, Miller E, Lu J, Litchman J, Wong ST
Automated axon tracking of 3D confocal laser scanning microscopy images using guided probabilistic region merging.
Neuroinformatics: Volume 7, Issue 1 (2009), Page 8 [ PMID: 17917130 ]

add the bullet in front of each paper Huang WT, Yang X, Zhou X, and Chang CC
Multiple distinct clones may co-exist in different lineages in myelodysplastic syndromes.
Leukemia Research, 33(6):847-853,2009 [ PMID: 19084271 ]

add the bullet in front of each paper Xiaorong Yang, Xiaobo Zhou, Wan-Ting Huang, Lingyun Wu, Federico A. Monzon, Chung-Che Chang and Stephen T.C. Wong
Pattern-selection Based Power Analysis and Discrimination of Low- and High-Grade Myelodysplastic Syndromes Study Using SNP Arrays.
Plos One, 4(4):e5054, 2009 [ PMID: 19352488 ]

Medical Imaging and Image-Guided Therapy

add the bullet in front of each paper Jeyarama S. Ananta, Michael L. Matson, Annie M. Tang, Trinanjana Mandal, Stephen Lin, Kelvin Wong, Stephen T. Wong and Lon J. Wilson
Single-Walled Carbon Nanotube Materials as T2-Weighted MRI Contrast Agents
J. Phys. Chem. C, 2009, 113 (45), pp 19369¨C19372

add the bullet in front of each paper JH Fu, K Wong, V Mok, XT Hu, YK Chen, WK Tang, XY Chen, A Wong, W Chu, KS Wong, S Wong.
Neuroimaging predictors for depressive symptoms in cerebral small vessel disease.
Int J Geriatr Psychiatry. 2009 Nov 27. [PMID: 19946871]

add the bullet in front of each paper Kwong KK, Kloetzer L, Wong KK, Ren JQ, Kuo B, Jiang Y, Chen YI, Chan ST, Young GS, Wong ST.
Bioluminescence Imaging of Heme Oxygenase-1 Upregulation in the Gua Sha Procedure.
J Vis Exp. 2009 Aug 28;(30). pii: 1385. doi: 10.3791/1385. [ PMID: 19718012 ]

add the bullet in front of each paper Wong KK, Tam CP, Ng M, Wong ST, Young GS
Improved residue function and reduced flow dependence in MR perfusion using least-absolute-deviation regularization
Magn Reson Med. 2009 Jan 22;61(2):418-428. [ PMID: 19161133 ]

add the bullet in front of each paper Zhong Xue*, Dinggang Shen
A new statistically-constrained deformable registration framework for MR brain images.
Int. J. Medical Engineering and Informatics, Vol. 1, No. 3, 2009 , pp 357-367.

add the bullet in front of each paper Wong STC.
Introduction to the special issue of "Advances in Molecular Imaging".
European Journal of Radiology 70 (2009) 199-200. [ PMID: 19261413 ]

add the bullet in front of each paper Jingxin Nie, Zhong Xue, Tianming Liu, Geoffrey Young, Kian Setayesh, Lei Guo, Stephen TC Wong
Automated Brain Tumor Segmentation Using Spatial Accuracy-Weighted Hidden Markov Random Field.
Comput Med Imaging Graph. 2009 Sep;33(6):431-41. [ PMID: 19446435 ]

Biotechnologies and Drug Development

add the bullet in front of each paper Hong Zhao, Jinmin Zhu, Kemi Cui, Xiaoyin Xu, Megan O'Brien, Kelvin K Wong, Santosh Kesari, Weiming Xia and Stephen TC Wong
Bioluminescence Imaging Reveals Inhibition of Tumor Cell Proliferation by Alzheimer's Amyloid beta Protein.
Cancer Cell Int. 2009 Jun 1;9:15 . [ PMID: 19480719 ]

add the bullet in front of each paper Zhao H, Tang C, Cui K, Ang BT, Wong ST.
A screening platform for glioma growth and invasion using bioluminescence imaging.
J Neurosurg. 2009 Aug;111(2):238-46. [ PMID: 19199503 ]

add the bullet in front of each paper Dominik Beck and Stephen Wong
Current Highlights in Nanomedicine from Engineering and Biomedical perspectives.
Journal of Nanomedicine 2009 Jul;4(5):515-7

add the bullet in front of each paper Zhiyong Wang, J. R. Heflin, Kevin Vancott, Rogers H. Stolen, Siddharth Ramachandran and Samir Ghalmi
Biosensors Employing Ionic Self-Assembled Multilayers Adsorbed on Long Period Fiber Gratings.
Sensors & Actuators: B. Chemical, 139, pp.618¨C623,(2009).

add the bullet in front of each paper Aysen Tulpar, Zhiyong Wang, Chang-Hyun Jang, Vaibhav Jain, James R Heflin and William A Ducker
Nanoscale patterning of ionic self-assembled multilayers.
Nanotechnology, 20, 155301, 2009. [ PMID: 19420543 ]

add the bullet in front of each paper Zhiyong Wang and Hai Xiao
Optical Intensity-Based Long-Period Fiber Grating Biosensors and Biomedical Applications.
IEEE Signal Processing Magazine, pp.121-127, March 2009.

add the bullet in front of each paper Wang Y, Cui K, Zhao H, Li D, Wang W, Zhu Y.
Bushen Ningxin Decoction pharmacological serum promotes the proliferation and suppresses the apoptosis of murine osteoblasts through MAPK pathway.
J Ethnopharmacol. 2009 Mar 18;122(2):221-6.